RnoALTD0034673-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000011627 | Zfr
Description
zinc finger RNA binding protein [Source:RGD Symbol;Acc:1311890]
Coordinates
chr2:62208274-62208594:+
Coord C1 exon
chr2:62208274-62208385
Coord A exon
chr2:62208386-62208389
Coord C2 exon
chr2:62208501-62208594
Length
4 bp
Sequences
Splice sites
5' ss Seq
TAAGTGTTT
5' ss Score
-8.39
3' ss Seq
TTTACAATGATTGTAGGCAGCCC
3' ss Score
-2.36
Exon sequences
Seq C1 exon
GCTATGGAGTTACTGGTAGAGAAAGCAATTAGCAGTGCTTCTAGTCCTCAAAGCCCTGGAGATGCCCTGAGAAGAGTATTTGAGTGCATTTCTTCAGGGATTATTCTCAAAG
Seq A exon
GTAA
Seq C2 exon
CCCTGGACTTCTGGATCCTTGTGAAAAGGATCCCTTTGATACTTTGGCAACAATGACTGACCAACAGCGTGAAGACATTACATCCAGTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011627-38-39,39-39-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=NA C2=0.248
Domain overlap (PFAM):
C1:
PF075289=DZF=PU(39.1=97.3)
A:
NA
C2:
PF075289=DZF=FE(12.4=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCTCAAAGCCCTGGAGAT
R:
ACAAGGATCCAGAAGTCCAGGG
Band lengths:
92-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]