RnoALTA0046049-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000025862 | Zp3r
Description
zona pellucida 3 receptor [Source:RGD Symbol;Acc:727846]
Coordinates
chr13:47320930-47331187:-
Coord C1 exon
chr13:47331110-47331187
Coord A exon
chr13:47321034-47321111
Coord C2 exon
chr13:47320930-47321033
Length
78 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
CTATTGAGTTTTCTTGGCAGAAA
3' ss Score
5.26
Exon sequences
Seq C1 exon
AGACACTTCATTCTGAGAGGGGGGAAAAATCCCAAGGCAACACTAGAGTCTTCCTACGTCTTATTCAGATACCTACAG
Seq A exon
AAACATATTGGAAAGGCATCAAAACATGTATTCTCCACAAGATTCAGATACACTCACCGAGAGTTCTGTCCTCCACAG
Seq C2 exon
AAAAGGGATAATGACAGCCTGGTCCTTGCATGAGCTGTGGAAAACCTCTCATTCAACACTGTTCCAAGTGACCCTGGCCACTGTTCTGATGGCTCCTGTTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025862-0-2,0-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.058
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACTTCATTCTGAGAGGGGG
R:
CAGGAGCCATCAGAACAGTGG
Band lengths:
175-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]