RnoEX0102208 @ rn6
Exon Skipping
Gene
ENSRNOG00000025862 | Zp3r
Description
zona pellucida 3 receptor [Source:RGD Symbol;Acc:727846]
Coordinates
chr13:47320930-47331187:-
Coord C1 exon
chr13:47331110-47331187
Coord A exon
chr13:47328113-47328398
Coord C2 exon
chr13:47320930-47321111
Length
286 bp
Sequences
Splice sites
3' ss Seq
ATACACAACTAAAATTACAGTTT
3' ss Score
1.31
5' ss Seq
CAGGTGAAA
5' ss Score
5.07
Exon sequences
Seq C1 exon
AGACACTTCATTCTGAGAGGGGGGAAAAATCCCAAGGCAACACTAGAGTCTTCCTACGTCTTATTCAGATACCTACAG
Seq A exon
TTTTATAAAAGAAAAAAAATACTACAATACCAAGAGAAGAACATCTCCGAAGGCACAGTGCCCCCTGTGAGCCTAGCACTTCGGCAGTGGTCTCAGCGCGGGGCTTCGGTGAACAAGGGATGTGACTGCTAAGCAGATAAGCCTGGCGTCCGTCTACTGTCAGGACTTAAACCAGCTGCTGCAAGCCCTTCAGAGAAGGCAGAGATCTTCATGCTGCCCCCTCTCTCCCATCCATCGCCTCCTTATAGAGGTCACCTTCTTACAGATGTGCCTACCTTTAAAACAG
Seq C2 exon
AAACATATTGGAAAGGCATCAAAACATGTATTCTCCACAAGATTCAGATACACTCACCGAGAGTTCTGTCCTCCACAGAAAAGGGATAATGACAGCCTGGTCCTTGCATGAGCTGTGGAAAACCTCTCATTCAACACTGTTCCAAGTGACCCTGGCCACTGTTCTGATGGCTCCTGTTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025862-'0-1,'0-0,1-1
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.069
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACACTTCATTCTGAGAGGGGG
R:
CAAGAACAGGAGCCATCAGAACA
Band lengths:
260-546
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]