RnoALTD0000614-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000059160 | AABR07050399.2
Description
NA
Coordinates
chr5:163867914-163869816:+
Coord C1 exon
chr5:163867914-163868014
Coord A exon
NA
Coord C2 exon
chr5:163869724-163869816
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTACCT
5' ss Score
7.63
3' ss Seq
CAATATTTTCCCATTTTCAGGTC
3' ss Score
10.63
Exon sequences
Seq C1 exon
CGCGGAAGTGACAGGAAGTTCCGCCCTTCCAGCTCTCTCCCTGTCTTGGCTTCCTCACATTCAGGAAGTCCTGGTGGGAGACTCGTCCCGGAGACCTAGAG
Seq A exon
NA
Seq C2 exon
GTCTTCATATGTTCAGCAAATCTGCATAACTATAAATCGAAACTAAGAGTACTGGATGGTAAAGGCCAAAGAGACTTCTAACAAAGGATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059160-0-0,1-0-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGAAGTGACAGGAAGTTCC
R:
TGGCCTTTACCATCCAGTACTCT
Band lengths:
168-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]