RnoEX0002951 @ rn6
Exon Skipping
Gene
ENSRNOG00000059160 | AABR07050399.2
Description
NA
Coordinates
chr5:163867961-163898960:+
Coord C1 exon
chr5:163867961-163868094
Coord A exon
chr5:163869724-163869816
Coord C2 exon
chr5:163898834-163898960
Length
93 bp
Sequences
Splice sites
3' ss Seq
CAATATTTTCCCATTTTCAGGTC
3' ss Score
10.63
5' ss Seq
CAGGTATCA
5' ss Score
7.33
Exon sequences
Seq C1 exon
GGCTTCCTCACATTCAGGAAGTCCTGGTGGGAGACTCGTCCCGGAGACCTAGAGGTACCTGAAAACTTCTTTAAGCTGCAGTTGCTGTGCCGGCTTCCTAGGACATTCATCAGCTGGTCCTGTCACCCTGCCAG
Seq A exon
GTCTTCATATGTTCAGCAAATCTGCATAACTATAAATCGAAACTAAGAGTACTGGATGGTAAAGGCCAAAGAGACTTCTAACAAAGGATGCAG
Seq C2 exon
GGTTTCTTAACCTTCAAGGATGTGGCTCCAGAGTTCACACTAGAGGAATGGGAAAGTCTCAGTTTTGCTCAGCGGGCACTGTACATGGATGTAATTTTGGAGACTTACTACAATCTATTGTCTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059160_MULTIEX1-1/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCGTCCCGGAGACCTAGA
R:
CCGCTGAGCAAAACTGAGACT
Band lengths:
177-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]