RnoEX0002952 @ rn6
Exon Skipping
Gene
ENSRNOG00000059160 | AABR07050399.2
Description
NA
Coordinates
chr5:163869724-163898960:+
Coord C1 exon
chr5:163869724-163869816
Coord A exon
chr5:163879569-163879677
Coord C2 exon
chr5:163898834-163898960
Length
109 bp
Sequences
Splice sites
3' ss Seq
CGAAGTTGTATTAATTTCAGATT
3' ss Score
4.84
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GTCTTCATATGTTCAGCAAATCTGCATAACTATAAATCGAAACTAAGAGTACTGGATGGTAAAGGCCAAAGAGACTTCTAACAAAGGATGCAG
Seq A exon
ATTTGTAGTTTTCAAATGCGGTTGTGAAATTTCAAGAACACTTCCAATATTTGAATCTGGGAGAAGAACAACAAAAAGAATGAGTGTGGCTCTGGGAAACACTCTTCAG
Seq C2 exon
GGTTTCTTAACCTTCAAGGATGTGGCTCCAGAGTTCACACTAGAGGAATGGGAAAGTCTCAGTTTTGCTCAGCGGGCACTGTACATGGATGTAATTTTGGAGACTTACTACAATCTATTGTCTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059160_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAAACTAAGAGTACTGGATGGT
R:
AGTCTCCAAAATTACATCCATGTACA
Band lengths:
162-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]