RnoALTD0000705-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000004937 | AABR07057765.1
Description
NA
Coordinates
chr7:87067887-87117794:-
Coord C1 exon
chr7:87117614-87117794
Coord A exon
NA
Coord C2 exon
chr7:87067887-87068056
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
ATATTCTGTTTTACCTACAGCTG
3' ss Score
10.8
Exon sequences
Seq C1 exon
AATATAACCTTGAGCCTTGTGAAGACCCTGGGATCCCCCAATATGGTAGCCGAGTTGGATTCAGCTTCGGAGTCGGGGATACTCTGACCTTCTCATGCTCACTGGGTTACCGACTGGAGGGTTCTTCTGAGATCATCTGTCTTGGCGGTGGCCGGCGAGTGTGGAGTGCACCTCTGCCAAG
Seq A exon
NA
Seq C2 exon
CTGAATGTGGTGCATCTGCAACAAATAACGAGGGAATTCTCCTCTCTCCAAATTACCCACTGAACTATGAAAACAACCACGAATGCATTTACAGTCTTCAGGTCCAAGCAGGAAAGGGCATCAATATTTCAGCCAGAACATTTCATTTAGCCCAAGGGGATGTTCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004937-22-28,23-28-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCATCTGTCTTGGCGGTGG
R:
GGAGAGAGGAGAATTCCCTCGT
Band lengths:
100-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]