RnoALTD0001225-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000012892 | Abca4
Description
ATP binding cassette subfamily A member 4 [Source:RGD Symbol;Acc:1309445]
Coordinates
chr2:225724327-225726078:+
Coord C1 exon
chr2:225724327-225724416
Coord A exon
NA
Coord C2 exon
chr2:225725904-225726078
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATC
5' ss Score
4.14
3' ss Seq
AATGTGCTTTTCCCTCCAAGACT
3' ss Score
5.41
Exon sequences
Seq C1 exon
GTTGTTCGACCAGAGAAGAAAGGGCACTGGAAAAGACTGAACCCTTAACAGAGGAAATAGAGGATCCGGAGTACCCAGAAGGAATGAATG
Seq A exon
NA
Seq C2 exon
ACTCCTTTTTTGAACGTGAGCTTCCAGGGTTGGTGCCTGGAGTGTGTGTGAAGAACCTGGTGAAGGTGTTTGAGCCCGGTAGCCGGCCAGCCGTGGACCGCCTTAACATCACTTTCTATGAGAACCAAATCACTGCATTCCTGGGTCACAATGGAGCCGGAAAAACCACCACCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012892-23-23,24-23-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0000522=ABC_tran=PU(18.6=45.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGACCAGAGAAGAAAGGGCA
R:
AAGGTGGTGGTTTTTCCGGC
Band lengths:
260-500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]