RnoALTD0002215-1/7 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000019466 | Agpat2
Description
1-acylglycerol-3-phosphate O-acyltransferase 2 [Source:RGD Symbol;Acc:1309229]
Coordinates
chr3:4048344-4055297:-
Coord C1 exon
chr3:4055203-4055297
Coord A exon
NA
Coord C2 exon
chr3:4048344-4048477
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGCAAGG
5' ss Score
2.53
3' ss Seq
ATTGATATCTCTGCCCTCAGCAT
3' ss Score
5.98
Exon sequences
Seq C1 exon
GTCGGTCTCTACTGCGTGCTCTGCCTGTCCTTCTCCGCCGCGGCCTCGATCGTCTGCCTGCTGCGCCACGGCGGCCGCACCGTGGATAACATGAG
Seq A exon
NA
Seq C2 exon
CATCATCAGCTGGTTTGTTCGGTCCTTCAAGTACGTGTATGGCCTTCGCTTTGAGGTCAGCGGACAGAAGAAACTGGAGGTGGACGGTCCCTGTGTCATCATTTCTAATCACCAGAGCATCCTAGACATGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019466-3-5,4-5,5-5,6-5,7-5,8-5,9-5-1/7
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0155316=Acyltransferase=PU(22.5=63.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGTCTCTACTGCGTGCTC
R:
CCATCATGTCTAGGATGCTCTGG
Band lengths:
228-494
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]