RnoEX0007942 @ rn6
Exon Skipping
Gene
ENSRNOG00000019466 | Agpat2
Description
1-acylglycerol-3-phosphate O-acyltransferase 2 [Source:RGD Symbol;Acc:1309229]
Coordinates
chr3:4048344-4055806:-
Coord C1 exon
chr3:4055679-4055806
Coord A exon
chr3:4055203-4055327
Coord C2 exon
chr3:4048344-4048477
Length
125 bp
Sequences
Splice sites
3' ss Seq
TGCTGTTGCTGCTTGTGCAGCTG
3' ss Score
6.25
5' ss Seq
GAGGCAAGG
5' ss Score
2.53
Exon sequences
Seq C1 exon
TTGTACGCCCTTGAGGAGCTGCGGTGCCCGGCTAAGGACTCCTGGCCTTGGGCCGCGGTGCAGGGGCGTGGGAGACAGCGCCAGAGCCCAGGCCACCTGGCTGCTCAGAGATGGGAGCCGCGGGACGA
Seq A exon
CTGAACCGCACAGCCAGGTTCTACGTCAAGGTCGGTCTCTACTGCGTGCTCTGCCTGTCCTTCTCCGCCGCGGCCTCGATCGTCTGCCTGCTGCGCCACGGCGGCCGCACCGTGGATAACATGAG
Seq C2 exon
CATCATCAGCTGGTTTGTTCGGTCCTTCAAGTACGTGTATGGCCTTCGCTTTGAGGTCAGCGGACAGAAGAAACTGGAGGTGGACGGTCCCTGTGTCATCATTTCTAATCACCAGAGCATCCTAGACATGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019466_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=50=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0155316=Acyltransferase=PU(22.5=63.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTACGCCCTTGAGGAGCT
R:
CATGTCTAGGATGCTCTGGTGA
Band lengths:
258-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]