RnoALTD0003290-2/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000013220 | Arhgap45
Description
Rho GTPase activating protein 45 [Source:RGD Symbol;Acc:1308662]
Coordinates
chr7:12739873-12741152:-
Coord C1 exon
chr7:12741052-12741152
Coord A exon
chr7:12740867-12741051
Coord C2 exon
chr7:12739873-12740197
Length
185 bp
Sequences
Splice sites
5' ss Seq
ACGGTAGGT
5' ss Score
10.15
3' ss Seq
TTTTTCCTACTCCCTCCTAGGAG
3' ss Score
9.33
Exon sequences
Seq C1 exon
GCTCCACCATGTTCTCTCGGAAGAAGCGAGAACTTATGAAAACTCCCTCTATTTCCAAAAAGAACCGCGCGGGGAGCCCCAACCCGCAGTCCTCCTCAGGG
Seq A exon
GTGAGTGGGGCACAGAACGGGTGGGGACCCAGGATGACAACCACAGCCTGTGGCCACTGATGGGTACAGGGACAGCTTACAGCACCATGCTGGGCCCAAGGTGGGGGAACCGGGCCAGCTATCGTCCTCAGCAGGCAGAATGGCCGGCAACAAGGAGCGGTCTGAACCTGGGAGTCCGCCTTACG
Seq C2 exon
GAGCTGCCTCGGAAAGACTGTACAGAAACTCCTAGCCTGGAGCCACCAGCCATGTCCCTGTCCACGGTGGCCAAGGGCACAGGAACACTCAAAAGGCCAACCAGCCTGAGCCGCCATGCCAGCGCTGCAGGCTTCCCACTCTCGGGCACTGCCACACGGACTCTGGGCCGTGGATATCGAAGCCCCCTCTCTGCTGCCAGCCCCGCAGAGCTACCCACTGAGGGACCTTTCCCTGACGGTGTAGAAGACATCTCAACCCTGCTGGCTGATGTTGCCCGCTTTGCTGAGGGCTTGGAGAAGCTCAAGGAGTTTGTGCTGCGGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013220-1-0,2-0,3-0-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.651
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTCCAAAAAGAACCGCGCG
R:
GAGAGGGGGCTTCGATATCCA
Band lengths:
242-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]