RnoALTD0003728-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000015269 | Atf7
Description
activating transcription factor 7 [Source:RGD Symbol;Acc:1304940]
Coordinates
chr7:144193891-144223437:-
Coord C1 exon
chr7:144223337-144223437
Coord A exon
chr7:144223014-144223336
Coord C2 exon
chr7:144193891-144193959
Length
323 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
3' ss Seq
TTCCCCTACCCCCTCCCCAGCTC
3' ss Score
8.37
Exon sequences
Seq C1 exon
CGGGAGGAAAGTATCTGCTCCGCTGAGGGGGGAAAGGAGGAGCAGGAGACAGATTGTGGGACCGAGCGCGGGCGGGCGGGAGGCGCCGGAGCTACCAGCGG
Seq A exon
GTGAGTCCTGTTAACATTAGCTAGTCCGTGGCCTGACAGGAGTCTCCCCTTCTACTCTGGCCAGTCCCAGCGTCCCGGGCCGGGGTCTCCCCTCCCAGTCTGTTGGACGGGGGCGCTGAGGCGGTGGCCAGGCCTGTCTGAGGAAGAGGGTGGGGCATAGGCTAAAGACAACCAATAGGAGAGAAGGAAGCCACAATTGGCGGCCATGAGCGCTAATGGGAGATCGCCTTTACCTTGCGGAGTGCCGCCCTCTTCTCTTCTCCCGCCTCCTTCCTTTTGGAGGAAGGCGGGGCCAGAGGACTGAAGTGTGGGGAGAACTTGGG
Seq C2 exon
CTCTGCTCTGCTTTATGAAATATGGGAGACGACAGACCGTTTGTGTGCAGTGCCCCAGGCTGTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015269-0-0,1-0-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.062
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0009621=zf-C2H2=PU(36.0=56.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]