RnoALTD0003789-3/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000021203 | Atl3
Description
atlastin GTPase 3 [Source:RGD Symbol;Acc:1309871]
Coordinates
chr1:222746207-222763903:+
Coord C1 exon
chr1:222746207-222746307
Coord A exon
chr1:222746308-222746615
Coord C2 exon
chr1:222763689-222763903
Length
308 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TGGTCTATAAATGAGCATAGGTG
3' ss Score
-1.73
Exon sequences
Seq C1 exon
CCCCCATTTCCTCTACGCCCCGGATGAGGGCGAAGACTCAGGACAGCGGGGCCCGGCCCAGAGAAGGCCGAACTACAATTCCCGATGGACCCGAGATTCCA
Seq A exon
GTACGCAGTCACAGGTACCCGCGGCAACGCTCTGGCGCACGCGCACAGAATGGTGGCGGGACTCGGCCGCGTGCGCTTTCCCGCCCTCGTCACGCCCTGCGCCGTCGGCAGGGCTGTCTCATAAGCTGTAGGCTCTCTCTACGCGCTCCTCCTTCTCCGTTTCTCCCGAAGTCCAGGCCCCGCCTGTTTCCCTCCTCCAGGGCCGCCTCAGCCCGCTCCTGTCTTCTGTGCCTCTGCTACTTCTGCTGAAGGAGGAGGCTCCATGTTGTCCCCTCAGCGAACTGCAGCGGTGGCATCGAGAGGAGCAG
Seq C2 exon
GTGATGCCATGGAGAATGGAAAACCTGGTCCAGTGCAGGTCGTTTTGGTTCATAAAGAGCAGCACTCCTTTGAGCTAGAAGAGAGAGCCTTGGCCAGCGTCCTCCTCCAAGACCATATCCGAGATCTTGATGTAGTGGTAGTATCAGTGGCTGGTGCTTTTCGAAAGGGCAAATCCTTCATTCTGGACTTTATGCTGCGATACTTATATTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021203-0-3,1-3,2-3-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=NA C2=0.083
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0226314=GBP=PU(18.5=70.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTCCTCTACGCCCCGGATG
R:
CTGAGAATATAAGTATCGCAGCATAA
Band lengths:
311-619
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]