RnoALTD0003982-3/5 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000007235 | Atp5mc1
Description
ATP synthase membrane subunit c locus 1 [Source:RGD Symbol;Acc:61933]
Coordinates
chr10:83897924-83898587:-
Coord C1 exon
chr10:83898487-83898587
Coord A exon
chr10:83898354-83898486
Coord C2 exon
chr10:83897924-83897970
Length
133 bp
Sequences
Splice sites
5' ss Seq
ACGGTAATG
5' ss Score
6.53
3' ss Seq
TCACCCCCTTCTTCTTGCAGATT
3' ss Score
12.7
Exon sequences
Seq C1 exon
AGCTGAGCGCTGAGACCAAGGGCTAAAGCTGCGAGGTGAGTCAGTCACCTTGAGCAGGGAGTGTGCTGTGGGCCGAGCAGGGGCTGCAGGGGAGTGGGAGT
Seq A exon
GCAGGTGACTTGGGGCCCGGAGACAGGGTCCGCTAGGCCGTGGGCTGTGCCATGTGGAGCAGCATTTGCCTCCAGGGATAGGGAAGGAGGACTAAAGTCTTTAAGCCTTATCAATTAATGTTAATTACCAACG
Seq C2 exon
ATTGAAAAATGCAGACCACCAAGGCACTGCTCATTTCTCCAGTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007235-4-0,5-0,6-0,7-0,8-0-3/5
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAGCGCTGAGACCAAG
R:
AGAACTGGAGAAATGAGCAGTGC
Band lengths:
146-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]