RnoALTD0004349-3/4 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000053881 | Baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:RGD Symbol;Acc:1305037]
Coordinates
chr7:2545276-2545772:+
Coord C1 exon
chr7:2545276-2545449
Coord A exon
chr7:2545450-2545522
Coord C2 exon
chr7:2545617-2545772
Length
73 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGC
5' ss Score
7.79
3' ss Seq
TGCTTATCCTCTGTACATAGATA
3' ss Score
7.5
Exon sequences
Seq C1 exon
ATGAATACACCAGGTGCTGCCAATCCTTGTTCTCCAGTGCAGCTTTCTTTCACCCACTTACCTGGAGGGGGCCCTAAGAGGCTATCTGGGGACTCTGAAGAAATACCACAGAGTCCCACAGGGCTGGGACAACCAAAACGGAGAGGGAGACCTCCTAGCAAGTTCTTCAAGCAG
Seq A exon
GTGGAGCAACATTACTTAACCCAGCTGACAGCCCAGCCTATCCCCCCTGGTGAGCAAGCTTGGCTAGGACGGG
Seq C2 exon
ATATGTGCTCAGGCTGGTGGTGGATCCGAGATCCTGAGACACTGGATGTCCTGCTCAAGGCGCTGCATCCCCGAGGCATCCGGGAGAAGGCGCTTCACAAACATCTTAGTAAGCACAAGGACTTTTTGCAGGAGGTTTGTTTGCAGCCCTTAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053881-29-40,30-40,31-40,32-40-3/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF156141=WHIM3=WD(100=79.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCACCCACTTACCTGGAGGG
R:
CCAGTGTCTCAGGATCTCGGA
Band lengths:
171-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]