RnoALTD0004349-2/4 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000053881 | Baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:RGD Symbol;Acc:1305037]
Coordinates
chr7:2545276-2545772:+
Coord C1 exon
chr7:2545276-2545449
Coord A exon
chr7:2545450-2545498
Coord C2 exon
chr7:2545617-2545772
Length
49 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
TGCTTATCCTCTGTACATAGATA
3' ss Score
7.5
Exon sequences
Seq C1 exon
ATGAATACACCAGGTGCTGCCAATCCTTGTTCTCCAGTGCAGCTTTCTTTCACCCACTTACCTGGAGGGGGCCCTAAGAGGCTATCTGGGGACTCTGAAGAAATACCACAGAGTCCCACAGGGCTGGGACAACCAAAACGGAGAGGGAGACCTCCTAGCAAGTTCTTCAAGCAG
Seq A exon
GTGGAGCAACATTACTTAACCCAGCTGACAGCCCAGCCTATCCCCCCTG
Seq C2 exon
ATATGTGCTCAGGCTGGTGGTGGATCCGAGATCCTGAGACACTGGATGTCCTGCTCAAGGCGCTGCATCCCCGAGGCATCCGGGAGAAGGCGCTTCACAAACATCTTAGTAAGCACAAGGACTTTTTGCAGGAGGTTTGTTTGCAGCCCTTAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053881-29-40,30-40,31-40,32-40-2/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF156141=WHIM3=WD(100=79.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCACCCACTTACCTGGAGGG
R:
ACCACCAGCCTGAGCACATAT
Band lengths:
147-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]