MmuALTD0002128-2/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000040054 | Baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:MGI Symbol;Acc:MGI:2151152]
Coordinates
chr10:128123766-128124262:+
Coord C1 exon
chr10:128123766-128123922
Coord A exon
chr10:128123923-128123988
Coord C2 exon
chr10:128124107-128124262
Length
66 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
TGCATACCCTCTGTACACAGAGA
3' ss Score
6.99
Exon sequences
Seq C1 exon
ATGAATACACCCGGTGCTGCCAATCCTTGTTCCCCAGTGCAGCTCTCTTCCACTCACTTGCCTGGAGGGACCCCTAAGAGGCTATCAGGGGACTCTGAAGAAATGTCACAGAGTCCCACTGGGCTGGGGCAACCAAAGCGGAGGGGGAGACCCCCTA
Seq A exon
GCAAGTTCTTCAAGCAGGTGGAGCAGCATTACTTAACCCAGCTGACAGCCCAGCCTATCCCCCCTG
Seq C2 exon
AGATGTGCTCGGGCTGGTGGTGGATCCGAGACCCTGAGACACTGGATGTCCTGCTCAAGGCACTGCATCCCCGAGGCATCCGGGAGAAGGCGCTTCACAAACATCTTAGCAAGCACAAGGACTTTTTGCAGGAAGTTTGTTTACAGCCCTTAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040054-41-56,42-56,43-56-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=NA C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF156141=WHIM3=WD(100=79.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGCTCTCTTCCACTCAC
R:
ATCCAGTGTCTCAGGGTCTCG
Band lengths:
168-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types