HsaALTD1004615-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000076108 | BAZ2A
Description
bromodomain adjacent to zinc finger domain 2A [Source:HGNC Symbol;Acc:HGNC:962]
Coordinates
chr12:56600943-56601402:-
Coord C1 exon
chr12:56601246-56601402
Coord A exon
chr12:56601180-56601245
Coord C2 exon
chr12:56600943-56601098
Length
66 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TATATCTCATCTGCTCACAGAGA
3' ss Score
7.93
Exon sequences
Seq C1 exon
ATGAATAGACCTAGTGCTGCCAACCCTTGTTCTCCAGTGCAGTTCTCTTCCACGCCCTTGGCTGGGTTGGCCCCTAAGAGGCGAGCAGGAGACCCTGGAGAAATGCCACAGAGTCCCACAGGGCTGGGACAGCCCAAACGGAGAGGGAGACCTCCCA
Seq A exon
GTAAGTTCTTCAAACAGATGGAACAGCGTTACCTAACCCAGCTGACAGCCCAGCCTGTCCCACCTG
Seq C2 exon
AGATGTGCTCAGGCTGGTGGTGGATACGAGATCCTGAGATGTTGGATGCCATGCTCAAGGCCCTACACCCCCGAGGTATCCGGGAGAAGGCACTTCACAAACACCTTAACAAGCACAGGGACTTCTTGCAGGAAGTCTGCCTGCGGCCCTCAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076108-68-76,69-76-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.879 A=NA C2=0.141
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF156141=WHIM3=WD(100=79.2)
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCTGGAGAAATGCCACAG
R:
TTTGTGAAGTGCCTTCTCCCG
Band lengths:
168-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains