RnoALTD0005510-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000013263 | Ccdc151
Description
coiled-coil domain containing 151 [Source:RGD Symbol;Acc:1310048]
Coordinates
chr8:23000872-23001519:-
Coord C1 exon
chr8:23001435-23001519
Coord A exon
chr8:23001429-23001434
Coord C2 exon
chr8:23000872-23001282
Length
6 bp
Sequences
Splice sites
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
3' ss Seq
CCACCCCTGCCTCTCTGTAGACG
3' ss Score
8.95
Exon sequences
Seq C1 exon
TTCCTGGCCACGTTAGAAGGAAAGCTGCCTCTGTACAACACCCGCATCCTTCTGCCCGTGGCTAGTGTCAAGGACAAGTTCTTTG
Seq A exon
GTCAGT
Seq C2 exon
ACGAAGAGGAGAGTGAGGATGATGACCGAGATGTAGTGACCCGCGCTGCCTTCAAGATCCGTTCCCAGAAGTTAATTGAAGCCCGCAGCAAGAAGCGCAATAAGTCGCGCAGATCTTAGACTCTCAATCAAGTCCCATCCGATGCCTCCGGGACTCTAGGGAGCCCTCCGACCCTCTGGGTCCACCTACGGGTGTGTGTGTCTGGGAGCCTCTGAGGCTCCTTCAAGGTCTGGAGGAAACTCAAGCAGGGAGCACCGCAGGCCAGTAGCGCCCGGGGGAGAGAAAAGGCCGAGCCAGAAGTTCCCACAGTAAATCTCCCGAGGCCGGTTGGTGCCCGCCTCAGAATCGCGCAATAAAGGTCACTGACCAACCCCCTGGGTATTCACCTCTTTTTGACCCTGCACCGCCCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013263-16-14,17-14-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=NA C2=0.256
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGTACAACACCCGCATCC
R:
CGGGTCACTACATCTCGGTCA
Band lengths:
100-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]