RnoINT0030551 @ rn6
Intron Retention
Gene
ENSRNOG00000013263 | Ccdc151
Description
coiled-coil domain containing 151 [Source:RGD Symbol;Acc:1310048]
Coordinates
chr8:23000872-23001519:-
Coord C1 exon
chr8:23001435-23001519
Coord A exon
chr8:23001283-23001434
Coord C2 exon
chr8:23000872-23001282
Length
152 bp
Sequences
Splice sites
5' ss Seq
TTGGTCAGT
5' ss Score
5.07
3' ss Seq
CCACCCCTGCCTCTCTGTAGACG
3' ss Score
8.95
Exon sequences
Seq C1 exon
TTCCTGGCCACGTTAGAAGGAAAGCTGCCTCTGTACAACACCCGCATCCTTCTGCCCGTGGCTAGTGTCAAGGACAAGTTCTTTG
Seq A exon
GTCAGTGTGAGTCAAAGGGGACGAATGGGAGGGGCAGGAGGTGGCCTTACGTCAAAGACAAGGAGGAGGTGCATGGTGTGGTGAAGGCTGGGAAGGGAAAAAGAAACAAACGTCTCTTACCCTCCCCACCACCCACCCCTGCCTCTCTGTAG
Seq C2 exon
ACGAAGAGGAGAGTGAGGATGATGACCGAGATGTAGTGACCCGCGCTGCCTTCAAGATCCGTTCCCAGAAGTTAATTGAAGCCCGCAGCAAGAAGCGCAATAAGTCGCGCAGATCTTAGACTCTCAATCAAGTCCCATCCGATGCCTCCGGGACTCTAGGGAGCCCTCCGACCCTCTGGGTCCACCTACGGGTGTGTGTGTCTGGGAGCCTCTGAGGCTCCTTCAAGGTCTGGAGGAAACTCAAGCAGGGAGCACCGCAGGCCAGTAGCGCCCGGGGGAGAGAAAAGGCCGAGCCAGAAGTTCCCACAGTAAATCTCCCGAGGCCGGTTGGTGCCCGCCTCAGAATCGCGCAATAAAGGTCACTGACCAACCCCCTGGGTATTCACCTCTTTTTGACCCTGCACCGCCCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013263:ENSRNOT00000017820:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=NA C2=0.256
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGGCTAGTGTCAAGGACAA
R:
ACCTTGAAGGAGCCTCAGAGG
Band lengths:
258-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]