BtaINT0032846 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008201 | CCDC151
Description
Bos taurus coiled-coil domain containing 151 (CCDC151), mRNA. [Source:RefSeq mRNA;Acc:NM_001102047]
Coordinates
chr7:17023514-17024085:-
Coord C1 exon
chr7:17024001-17024085
Coord A exon
chr7:17023854-17024000
Coord C2 exon
chr7:17023514-17023853
Length
147 bp
Sequences
Splice sites
5' ss Seq
TTGGTCAGT
5' ss Score
5.07
3' ss Seq
CGGGAATGGGAATCTCTCAGACG
3' ss Score
-1.23
Exon sequences
Seq C1 exon
TTCTACGCCACCCTCGAGGGAAAACTGCCGTCGTACAACACCCGCATCGCCCTGCCAGTCGCCGGTCACAAGGACAAGTTCTTTG
Seq A exon
GTCAGTACGGGCAGGGAAAGGGGGCGAGGCTGGGAGCCCAAGCAGTGCATCGGGAGGTGGTCAGGAGCCGGACATATAGGGCCCAGGTGGGGATGGGGTGGTAAAGGCCGGGGAGAGAAATCTGATCCGGGAATGGGAATCTCTCAG
Seq C2 exon
ACGAGGAGGAGAGTGAGGAAGATGACAGCGACGTGGTGACCCGTGCGGCGCTCAAGATGCGTTCCCAGAAATTAATCGAATCCCGCAGCAAGAGGCGCGGTCGCTCACGAAGGTCCTAGACGCGCGCTCGCGCCCGCCTGGCGTTTCCGGGCCCCTGCTGCGGGGGCCCACGGGGCCCCTTTAAGGGCTGAACGCGGCCCGGACAGGGGAGCGGAGCTGGCAGGCGATGCCCAGAGTGAAAAAGGGGGCTGGGCCGCCGGATGTTCCCACAGTAAATTTCCCCAGGCTGGTCCACGCAGGTCTCGGAATCGCTCAATAAAGGTCACCGACAAGCCCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008201:ENSBTAT00000010785:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.172 A=NA C2=0.744
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGTACAACACCCGCATCG
R:
CCGCGTTCAGCCCTTAAAGG
Band lengths:
253-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]