HsaINT0029237 @ hg19
Intron Retention
Gene
ENSG00000198003 | CCDC151
Description
coiled-coil domain containing 151 [Source:HGNC Symbol;Acc:28303]
Coordinates
chr19:11531272-11531880:-
Coord C1 exon
chr19:11531796-11531880
Coord A exon
chr19:11531616-11531795
Coord C2 exon
chr19:11531272-11531615
Length
180 bp
Sequences
Splice sites
5' ss Seq
TTGGTCAGT
5' ss Score
5.07
3' ss Seq
CATCCCCCCACCCCCCTTAGACG
3' ss Score
7.37
Exon sequences
Seq C1 exon
TTCCTCGCCAGCTTAGAGGGAAGGCTGCCCGAATACAACACCCGCATCGCCCTGCCCCTTGCCACTTCCAAGGACAAGTTTTTTG
Seq A exon
GTCAGTATGGGTGGGGGGATGAAGGGGTGCGGTTGGGGCCCCAAGCTGGGTAGCAGGAGGTTGTCAGATACCCTGTTCAGGGCCAAGGTGGGGGTGGAGTGGGGTGGTAAAGGGAAGGGGAGCCAGGGATGGGGACCTGGATCCCACATCGCTCCCTGCTCATCCCCCCACCCCCCTTAG
Seq C2 exon
ACGAAGAGAGTGAGGAGGAGGACAACGAGGTAGTGACCCGCGCATCACTCAAGATCCGTTCCCAGAAATTAATCGAAAGTCACAAGAAGCACCGTCGCTCTCGGAGGTCCTAGACTCGTCCTGACACCCACCAGGCGGCCCCCTTCGGAGCCCCCGATCCCTCCGGGTCTAGCGCAGGCCCCACGGGGCCCCTTCAGGGGCTGAACGCGGCCCGGACCGGGAACGGAGGCGGCCAGCGGCGCCCGGAGGGGAGGAAGGGGCCGGGCCAGACGTTCCCACAGTAAATCTCCCCAGCTGGGTCCGCCCCGGCCTCAGAGTTGCGCAATAAATGTTACCGACCATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198003-CCDC151:NM_145045:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=NA C2=0.486
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGCTGCCCGAATACAACA
R:
CCTGCGCTAGACCCGGAG
Band lengths:
244-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)