RnoALTD0006805-3/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000013442 | Ciz1
Description
CDKN1A interacting zinc finger protein 1 [Source:RGD Symbol;Acc:1305336]
Coordinates
chr3:11400246-11400791:+
Coord C1 exon
chr3:11400246-11400391
Coord A exon
chr3:11400392-11400490
Coord C2 exon
chr3:11400632-11400791
Length
99 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGG
5' ss Score
10.88
3' ss Seq
AGACACAGACACATCCACAGGTA
3' ss Score
-0.23
Exon sequences
Seq C1 exon
AGGAGTCCACCGAGAAAGGCCCTACAGGGCAGCCACAAGCAAGGGTCCAGCCTCAGACCCAGATGACAGCACCAAAGCAGACACAGACCCCAGATCAGCTGCCTGAGCCACCGGAAGCCCTGGTGGTGCCGCGAATCCAGCCACAG
Seq A exon
GTTCTGCAGATCCAGACTCTGTCAAAGCTGCAGAAGCAGGCACAGACACAGACTTCTCCAGAGCACTTAGCGCCCCAGCAGAATCAGGTACAGCCACAG
Seq C2 exon
GTATCCACCCAAGCACAGCCACAGGAGCAGACATCAGAGAAGACCCAGGACCAGCCTCAGACCTGGCCACAGGGGTCGGCACCCCCACCAGAACAAGCATCAGTTCCGGCCTGTGCCACGGAACCACAGCTATTATCTAACGCTGCAGAAGTTGGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013442-9-16,10-16,11-16-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCACCAAAGCAGACACAGA
R:
CTGATGCTTGTTCTGGTGGGG
Band lengths:
183-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]