RnoINT0036651 @ rn6
Intron Retention
Gene
ENSRNOG00000013442 | Ciz1
Description
CDKN1A interacting zinc finger protein 1 [Source:RGD Symbol;Acc:1305336]
Coordinates
chr3:11400241-11400791:+
Coord C1 exon
chr3:11400241-11400490
Coord A exon
chr3:11400491-11400631
Coord C2 exon
chr3:11400632-11400791
Length
141 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGG
5' ss Score
10.88
3' ss Seq
AGACACAGACACATCCACAGGTA
3' ss Score
-0.23
Exon sequences
Seq C1 exon
CTCAGAGGAGTCCACCGAGAAAGGCCCTACAGGGCAGCCACAAGCAAGGGTCCAGCCTCAGACCCAGATGACAGCACCAAAGCAGACACAGACCCCAGATCAGCTGCCTGAGCCACCGGAAGCCCTGGTGGTGCCGCGAATCCAGCCACAGGTTCTGCAGATCCAGACTCTGTCAAAGCTGCAGAAGCAGGCACAGACACAGACTTCTCCAGAGCACTTAGCGCCCCAGCAGAATCAGGTACAGCCACAG
Seq A exon
GTACGGTCACAGCCCCAGTGGCAGTTGCAGCCATGGGAGACAGACCCACCGAAGCAAGCTCAGGCACAGACCCAGCCTCAGCCCCTCTGGCAGGCGCAGTCGCACAAGCAGGCCCAGACACAGACACAGACACATCCACAG
Seq C2 exon
GTATCCACCCAAGCACAGCCACAGGAGCAGACATCAGAGAAGACCCAGGACCAGCCTCAGACCTGGCCACAGGGGTCGGCACCCCCACCAGAACAAGCATCAGTTCCGGCCTGTGCCACGGAACCACAGCTATTATCTAACGCTGCAGAAGTTGGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013442:ENSRNOT00000037399:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCTCAGACCCAGATGACAG
R:
CTGGTCCTGGGTCTTCTCTGA
Band lengths:
251-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]