RnoALTD0007227-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000027016 | Cobll1
Description
cordon-bleu WH2 repeat protein-like 1 [Source:RGD Symbol;Acc:1308954]
Coordinates
chr3:51159584-51164488:-
Coord C1 exon
chr3:51164429-51164488
Coord A exon
NA
Coord C2 exon
chr3:51159584-51159812
Length
0 bp
Sequences
Splice sites
5' ss Seq
AGGGTATGT
5' ss Score
8.34
3' ss Seq
GTATCTGCATCTCTTTGTAGCTG
3' ss Score
8.35
Exon sequences
Seq C1 exon
GCCTACCTTTGGAGGATGGGATTGTTCCAGACAGCATTTCAGAAGTGAGCTCTCCTGAGG
Seq A exon
NA
Seq C2 exon
CTGGCGTAAGCTCGGATTACAGTCTTGAAGAGATAGATGAAAAGGAAGAACTGATGGAGGCGTCTAAAGATCAGGCTGGAAGTGTGAAGTCGCCTACCATTGCTTCAGCATCTACGGATATGATAATTACAGCGGAGAATGATCCTGATTCAGCCCTCAGCATCAGTGATGGAGAGACCTCTCCAGGCTCTAAGGGAAACACTCCAGAAGGCAGAAACCCAGAGGGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027016-23-12,24-12-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAAGTGAGCTCTCCTGAGG
R:
CGACTTCACACTTCCAGCCTG
Band lengths:
114-129
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]