RnoEX0022650 @ rn6
Exon Skipping
Gene
ENSRNOG00000027016 | Cobll1
Description
cordon-bleu WH2 repeat protein-like 1 [Source:RGD Symbol;Acc:1308954]
Coordinates
chr3:51159584-51164488:-
Coord C1 exon
chr3:51164414-51164488
Coord A exon
chr3:51163095-51163199
Coord C2 exon
chr3:51159584-51159812
Length
105 bp
Sequences
Splice sites
3' ss Seq
AGACTCTACTTCTTTGACAGAGG
3' ss Score
4.01
5' ss Seq
CCTGTAGGT
5' ss Score
3.22
Exon sequences
Seq C1 exon
GCCTACCTTTGGAGGATGGGATTGTTCCAGACAGCATTTCAGAAGTGAGCTCTCCTGAGGGTATGTCCAGCCCAG
Seq A exon
AGGGCCCGGGGTTCCTAAGCCAGGAAGAGTGCTCTGTGCCCAAGCCAATGGATGAAATCTCTGAGGGCCCTGGAACTCCAGAGGCAGCTGTAGCTTCCATGACCT
Seq C2 exon
CTGGCGTAAGCTCGGATTACAGTCTTGAAGAGATAGATGAAAAGGAAGAACTGATGGAGGCGTCTAAAGATCAGGCTGGAAGTGTGAAGTCGCCTACCATTGCTTCAGCATCTACGGATATGATAATTACAGCGGAGAATGATCCTGATTCAGCCCTCAGCATCAGTGATGGAGAGACCTCTCCAGGCTCTAAGGGAAACACTCCAGAAGGCAGAAACCCAGAGGGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027016_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000001607fB3348
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTGAGCTCTCCTGAGGGT
R:
TCTGGGTTTCTGCCTTCTGGA
Band lengths:
257-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]