HsaEX0016156 @ hg19
Exon Skipping
Gene
ENSG00000082438 | COBLL1
Description
COBL-like 1 [Source:HGNC Symbol;Acc:23571]
Coordinates
chr2:165557032-165561028:-
Coord C1 exon
chr2:165560954-165561028
Coord A exon
chr2:165559614-165559730
Coord C2 exon
chr2:165557032-165557266
Length
117 bp
Sequences
Splice sites
3' ss Seq
AGATTCTACTTCTTTGGCAGAAA
3' ss Score
4.51
5' ss Seq
CATGTAGGT
5' ss Score
4.94
Exon sequences
Seq C1 exon
CCTTACAGCCAGTAGATGGAGTTCCTCCAGACAGTGCTTCAGAAGCAAACTCTCCTGAGGAGCTATCCAGCCCAG
Seq A exon
AAACCTTTCACCCTGGGCTTTCCAGTCAGGAGCAGTGCACTGCGCCCAAACTGATGGAGGAAACCTCTGTCTTTGAGTGCCCTGGGACACCTGAGGCAGCCATAACATCATTGACAT
Seq C2 exon
CTGGAATAAGCTCTGATTATAGCCTTGAAGAGATAGATGAAAAGGAAGAACTGAGTGAAGTGCCTAAAGTTGAAGCTGAAAATATTTCTCCGAAGTCACAAGATATTCCTTTTGTATCTACTGATATAATAAATACACTGAAAAATGATCCTGACTCAGCCCTTGGCAATGGTAGTGGAGAGTTCTCACAAAACTCCATGGAAGAAAAACAAGAAACTAAAAGCACAGATGGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000082438_MULTIEX1-2/3=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTCCTCCAGACAGTGCTT
R:
GAACTCTCCACTACCATTGCCA
Band lengths:
242-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)