HsaEX0016156 @ hg38
Exon Skipping
Gene
ENSG00000082438 | COBLL1
Description
cordon-bleu WH2 repeat protein like 1 [Source:HGNC Symbol;Acc:HGNC:23571]
Coordinates
chr2:164700522-164704518:-
Coord C1 exon
chr2:164704444-164704518
Coord A exon
chr2:164703104-164703220
Coord C2 exon
chr2:164700522-164700756
Length
117 bp
Sequences
Splice sites
3' ss Seq
AGATTCTACTTCTTTGGCAGAAA
3' ss Score
4.51
5' ss Seq
CATGTAGGT
5' ss Score
4.94
Exon sequences
Seq C1 exon
CCTTACAGCCAGTAGATGGAGTTCCTCCAGACAGTGCTTCAGAAGCAAACTCTCCTGAGGAGCTATCCAGCCCAG
Seq A exon
AAACCTTTCACCCTGGGCTTTCCAGTCAGGAGCAGTGCACTGCGCCCAAACTGATGGAGGAAACCTCTGTCTTTGAGTGCCCTGGGACACCTGAGGCAGCCATAACATCATTGACAT
Seq C2 exon
CTGGAATAAGCTCTGATTATAGCCTTGAAGAGATAGATGAAAAGGAAGAACTGAGTGAAGTGCCTAAAGTTGAAGCTGAAAATATTTCTCCGAAGTCACAAGATATTCCTTTTGTATCTACTGATATAATAAATACACTGAAAAATGATCCTGACTCAGCCCTTGGCAATGGTAGTGGAGAGTTCTCACAAAACTCCATGGAAGAAAAACAAGAAACTAAAAGCACAGATGGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000082438_MULTIEX3-2/3=C1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTCCTCCAGACAGTGCTT
R:
GAACTCTCCACTACCATTGCCA
Band lengths:
242-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development