HsaINT0037715 @ hg38
Intron Retention
Gene
ENSG00000082438 | COBLL1
Description
cordon-bleu WH2 repeat protein like 1 [Source:HGNC Symbol;Acc:HGNC:23571]
Coordinates
chr2:164700522-164704518:-
Coord C1 exon
chr2:164704444-164704518
Coord A exon
chr2:164700757-164704443
Coord C2 exon
chr2:164700522-164700756
Length
3687 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
ATATCTGCATTTCTTTGTAGCTG
3' ss Score
8.05
Exon sequences
Seq C1 exon
CCTTACAGCCAGTAGATGGAGTTCCTCCAGACAGTGCTTCAGAAGCAAACTCTCCTGAGGAGCTATCCAGCCCAG
Seq A exon
GTATGACACCCTTATTCTACATGGTGTAATTACTGAAAAAGGACGTCCATGATAATTGAGAAATGAGTCCATTTGCGATGCTTTGTACATGAAAGAGATACAGATTCTTTGGCCTCATTTCCCAAATTTTTATTATGAAATAAATTCTTGCCCCCACCCCTCTGCCCCTCAACCCAATTAGAGTATGAAGCTGGCAGAGATCAAAATTTCAGTTCTGGAATTGTCCTTGAGTACTTTTTCTATGTGGTCTCCTGCTTTCCTTTATGCAGTATCAGGTTAACATTTATTAACCTCCTTCCCAAGTGTAATGACACACCGTAATTAGGAATGTACCTTGGTGTGTGCAGAAGAAAACTTACAGGAAAGTGTAAGCACAATTTCTTGATGCAACTGTTCTAGGTATGAACTCAACATACAAGTTACCCTACTCTAATGGTAAAAATCTGTTACCATGAAAATGTTTTCTGTTGCAGTATATGGCTCTCCTCTAGGATTCTTTCCAAACAAAATTCCATTACAAGTTACATAATTTATAGTAATACTTTTCCAGTGTTTTTAATAATAGCTACTTAGTAGCTTTTCTAAGAAGTATGATAAAAATGTTTTAATCTTTAGAGTTACTATTAGACATCAATGAATGTGATAGACTAGTAATATCATACCAAAAATAGAATATGATTATGCTAGGACTTTATCATGGGGATAATTCTGTAAGTATAAAAAATGCTTAATATGACTCGCCTGATTTTTATAATTTATATTCCAAATACAGGAAACATTTAGGAGGAACACTCTTGAATCTTTCATCTTTAAGTGGTATTTAAGAATTTGGAATTTTAGCATATATATGTAAGAATTCTTCACTCCTCTGTGATTTTAAATCTTACTCTCAGATAACTAGTAATGATTTTTCTCAGCTTTTACTCAGAATAATATAAATGGCACCATTTTTTTCCACAAAGGAAATGTATTGAATAATAACAATTACAACTGTTGAGTGAAATTAGAAGTCACTGAAATATTATAAAAAGGAGTGCATGCTATTCAAACTTTGCTTCATATCTGTTTTTCTTCATTTGTTTTTTTCCTTTTACCTCTTCTTATTTAATGCATGGATAATTGTGAGCTAACAAATCTGATTTCTTCCAAAATGCTTCTTGGTCTCTGCTTGCCTTAACTCTGTTGTCTAAGTGCCATTTCTACAGATTCTACTTCTTTGGCAGAAACCTTTCACCCTGGGCTTTCCAGTCAGGAGCAGTGCACTGCGCCCAAACTGATGGAGGAAACCTCTGTCTTTGAGTGCCCTGGGACACCTGAGGCAGCCATAACATCATTGACATGTAGGTGGTCAGGCCTTTCCTGGCTGGTGCTTTGTGTCAGGCAGGTTAAGATATCATCGACTGTAAATTTGATGAGCTATTGAAACCTTGTGTAAACATATTTTATAAAGAAAGAGAAGTTTCCCCTTTTTCACTTGAAATTTTATCTGGGTGTAGAGTTTGTTGTTTTTCCCAACCATACAGATGAATACAACAGAGTGGATTAGTTAAATAAAATCAGTGGTTCCGAAGAATTTTAGCTTCTCTTCTATTTGGCTTATATATACTGAGGGGTCACTTTGAAAACACAATTGAGGCTGGGCATGGTGGCTCACACTTAAAATACCAGCTACTCATGAGGCTGAGGTGGAAGATTGCTTGAGCCCTGAATTTTGAGACAGCAGTGAGCTATGATCATGCCACTGAACTCCAGCCTGGGTGACAAAGCAAGACCTTATAATAAAAATTAAAAAACACATTTGTATCTAAACCATCATGGCCTTTCATTTTTTTTCAATACAGAGTTTTCAAATTATTATTATTATTATTTTTTTTTTTTTTTTTTTGAGGAGTCTCACTGTTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTGCAAGCTCCACCTCCTGGGTTCACGCCATTCTCCCGCCTCAGCTTGCTGAGTAGCTGGGACTACAGGCGCCCGCCACCACACCTGGCTAATTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACTATGTTGGCCAGGATGGTCTCGATCTCCTGACCTTGTGATCCGCCCTCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCACGCCCAGCCTAGAGTTTTCAAATTATATAAATACGTTCTTAACACATAGATACAATATGCTATCGTAGACACATTATTTCTATTTCACATCATAATAAAGCATCATTTGCCAAAATATGTACATTTGAATATTCACTTAAACCTAAATTTTAAAATATTTTTTATTGAGTAATCTATTTTTATTAATGATAAAAATACCATTAAAATTTCTCATGTTTATTTCTCAAAGAGCACAAATAGCACACTTTTCTGTCTGTATACTTAGAGATAAAATTTTAAAAATATATTTTAAGTACTTTAAATATTGAATTATGTTAAAAATTTAAATTAAATTTTCTGAATGTGCTGATTACTATAATTGGATGCTACACCACCTCCCCACCCCGCCCCCCCCTCCCACCACATCCCCAGCCTTGGGATAAAATTAAATTTCATTCAGATACTGTGGTGTATATGGAAATGTTTAATTATATTTAGCAAAAATCCAGAACCTCACTCTGGCTTACATTTACTTCCATGGCTAATCTTGACAATAAGCATGAACATTAACTGCTCAGGATGCCTCCTTCTCTTTTACCCTGCTGGCTACTGGTTGTTGGTGATAAAATACATTTTTTTTATACAGTGAAATGTTAACCACAGCTATTGAAAATATTTATGTGTAAACATATATATTAATATGGATGATATTTAAGATATTGTAAGTGGAAAAAAAGCTAGGTGGCTACAGTATGCTTCCATTTATATTAAATAAACTAACAAAAGGAAACGTGAGTATGGTTATCAGCCTATGTATGTATATTACACTTTCTCAGGACATACAGGAAAAACTGTTAAAGCAAGTTGCCTCTGAGAATCAAACTGGTTAGGAATAAAACTTAATTTTCATTGTCCAATACTTGCTCTATTTGTATTTTCACAAATTAAGCATCTAGGTCAGTGGCTTTTAACTGAGGTTGCATAGTAGAATCATCTAAGTAGTCTTAAAAATCCCTTGCCCCACCCTTCAGAGATTCTGATTTTGTGGAGTAGGGTGTGAGCCTCAATATTTTTAAAGGGGGCTCAGGTAATTCTCAAGTATAGTTGGTACTAATAACTATTGAGTCAAATTTTATGAGTGCCCTTGTAGACAATACAAAAATCTCATGTGCTTTTCATTTTCACTTTTAAAATTATTAATTTGCCTTTAATTTGCACTATTGAGTTGCTGGATGAGTGTAAAAACCATTCAATTGTAAGACATTTCTTAAATGAAATATTTAACTTAAAGTTTATGAGATTAAATAACCTCTTGTCTCTACCATGAATAAAACCTAGAGTGATAGCAAATTGTTTTGGGAATTATGAGTCTGAGATAATCTGGTTTTATGTTAACGTGACTGCTCACCAGGAGAAAGAACTTCACTATTATTTTTGAGGCAGAATTTAAAAGAGTCCAGCTAATTATTATTTTTCAAAATTCCTTCCTTGCCAGAATTGCATGTGATGAATGAGGCAAATTAATATTTAGGATTATATCTGCATTTCTTTGTAG
Seq C2 exon
CTGGAATAAGCTCTGATTATAGCCTTGAAGAGATAGATGAAAAGGAAGAACTGAGTGAAGTGCCTAAAGTTGAAGCTGAAAATATTTCTCCGAAGTCACAAGATATTCCTTTTGTATCTACTGATATAATAAATACACTGAAAAATGATCCTGACTCAGCCCTTGGCAATGGTAGTGGAGAGTTCTCACAAAACTCCATGGAAGAAAAACAAGAAACTAAAAGCACAGATGGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000082438:ENST00000409184:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development