MmuINT0038652 @ mm9
Intron Retention
Gene
ENSMUSG00000034903 | Cobll1
Description
Cobl-like 1 [Source:MGI Symbol;Acc:MGI:2442894]
Coordinates
chr2:64943772-64945143:-
Coord C1 exon
chr2:64945069-64945143
Coord A exon
chr2:64943886-64945068
Coord C2 exon
chr2:64943772-64943885
Length
1183 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGC
5' ss Score
9.37
3' ss Seq
AGACTCTACTTCTTTGACAGAGG
3' ss Score
4.01
Exon sequences
Seq C1 exon
GCCTACCTTTGGAAGATGGGATTGCTCCAGACAGCATGTTGGAACTGAGCTCTCCCGAGGGAATGTCCACCCCAG
Seq A exon
GTATGCATGCCTCTTTCACCCCACACGGGAACTGTGAAGGGAAGAAATGTCTTTACAGTAGAGAAATTAATCTGATTGAAATGCTCTTTGTACTGAGAGATTTTAATTCTTTCTACACATTTGTACTATGAAAAAAATCCTCCACCCCACCCCACCCCCCCTTCCACCACCAAGGAATAGACACAAGGATAAGAAACTGGCAGAAATCACATTTTCAGTGCTGGAGTTCTCTATTTGGTCTATTTTTTTTTTCCTTATGTGCTCTCTAGTGAACAGTTAACCGCTTCTTTCTAGGTACTGACACACCGTGGTATGTCACATTCCTTAGTATGTTTCAAAGACTTAACATTAAGCACAGGCTCTTTGGGCAGCTGCTTCAGCTATGAATTCAGCTTTGATGTGTTCTCCTCTTTACAGGGAATTTCACTCACATGTACTTTCCGCCACATAGCTCTCAGTGTGGATTCTCCCAAGGAAATGAAGTTTAAAAAAGAAAATCAGACATTTTTGATATGTCTTTAATTATTTCAACAGTAACTACTTAGAAGCTTTTGTAAGAATAAGTCTGAGCAGGGTGTGGTGGTACAAATCTGTAATTGCAGTCCTTGGGAGGTTGAGGCCAGCCTGGCTTAAGAAGGAAAAACTTATTAACAATCTCAGAACCTGAGTACATTAGCATGCAGATAATTTGTAAGTGTGAATGTTGGCCAGGTACGAGTACCTGGGTTGTATCATTTATATTCACAGAGATGGGCAAGTTCAGGAACAGCTTACTCTTTTTCCTTGACTTTAACATGGTACTTAGAAGTTTGGGATTTTAAGTTGTAAAAGAATCCCCTGTTTATAATTAAAATATTGCTATTACATAAGTAGCATTTTTTTTTTCCTTAGAGCAGTCTGTGCATTTCATTCCAACTCATCTACAGCCATCTCATTGTACACAGGGACTTTACCAAGATAATGTTGCCCACATAAAAGACATACAGGAATTAGAAGGCTTTGAAGTTCGAGAAAGATGGCCAGGCTACTCAGACTTCGGCCTATGTCTGGGTCTGTGTTTTCAAGGCTATTCCTTCGTATATGTGAGCTTGCAGCGCTGATCCCACCCCATCTGGATGTGTGCTTGCTTTGTTTTAACTCTCTTCTCTGAGTACCATTTCTACAGACTCTACTTCTTTGACAG
Seq C2 exon
AGGGCTCCCTTGGTCCCGGGTTCCTAAGCCAGGAGCAGTGTGCTGTGCCCAAGCCGCCGGATGAAATCTCTGAGGGCCCTGGAACTCCAGAGGCAGCTGTAGCATCCTTGACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034903-Cobll1:NM_177025:8
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTACCTTTGGAAGATGGGA
R:
CAAGGATGCTACAGCTGCCTC
Band lengths:
185-1368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: