RnoALTD0007776-2/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000000901 | Crcp
Description
CGRP receptor component [Source:RGD Symbol;Acc:620753]
Coordinates
chr12:30151024-30161017:-
Coord C1 exon
chr12:30160917-30161017
Coord A exon
chr12:30160836-30160916
Coord C2 exon
chr12:30151024-30151060
Length
81 bp
Sequences
Splice sites
5' ss Seq
AGTGTAAGC
5' ss Score
5.32
3' ss Seq
CACTCACTGTCCTTTTGCAGGAA
3' ss Score
11.25
Exon sequences
Seq C1 exon
TAGGAACACCTAGAATTAAGGAGGATCCGGGCGAGCCCTGCAGCGATCCCGGCATGCACCACGGCGGTCCCAGAGTGCCTTGCGGCACACACACAGAAACG
Seq A exon
GTGAGCAGAGCAGAGCTGGCGTAACGTGAGGTTCTTCTCTTCCAGCGGTTGTGTACGACGAGGCAGAGGCAACATGGAAGT
Seq C2 exon
GAAGGATGCGAACGCTGCCCTGCTCAGTAACTACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000901-1-2,2-2,3-2-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.019
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF061336=DUF964=FE(17.1=100),PF117613=CbiG_mid=FE(17.9=100),PF0387411=RNA_pol_Rpb4=PU(11.6=38.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACACCTAGAATTAAGGAGGATCC
R:
TCGTAGTTACTGAGCAGGGCA
Band lengths:
135-216
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]