RnoEX0024430 @ rn6
Exon Skipping
Gene
ENSRNOG00000000901 | Crcp
Description
CGRP receptor component [Source:RGD Symbol;Acc:620753]
Coordinates
chr12:30148187-30180115:-
Coord C1 exon
chr12:30180031-30180115
Coord A exon
chr12:30151024-30151060
Coord C2 exon
chr12:30148187-30148285
Length
37 bp
Sequences
Splice sites
3' ss Seq
CACTCACTGTCCTTTTGCAGGAA
3' ss Score
11.25
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
CCTTTGTGTGTGGGCTGAAGTACATGCCCAGGAGTGCTCAGGCTGTGGCATGCATGTGGAAGTTAGAGGACGACTATGAAGATTG
Seq A exon
GAAGGATGCGAACGCTGCCCTGCTCAGTAACTACGAG
Seq C2 exon
GTGTTCCAGTTACTGACAGACCTCAAAGAGCAGCGGAAGGAGAGCGGGAAGAACAAGCATAGCGCCGGGCAGCAGAACTTGAACGCCATCACCTACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000901_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.019 C2=0.409
Domain overlap (PFAM):
C1:
PF061336=DUF964=PU(25.7=85.7),PF117613=CbiG_mid=PU(23.9=76.2)
A:
PF061336=DUF964=FE(17.1=100),PF117613=CbiG_mid=FE(17.9=100),PF0387411=RNA_pol_Rpb4=PU(11.6=38.5)
C2:
PF061336=DUF964=FE(45.7=100),PF117613=CbiG_mid=FE(47.8=100),PF0387411=RNA_pol_Rpb4=FE(74.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTACATGCCCAGGAGTGC
R:
CTCTCCTTCCGCTGCTCTTTG
Band lengths:
113-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]