MmuEX6021323 @ mm10
Exon Skipping
Gene
ENSMUSG00000025532 | Crcp
Description
calcitonin gene-related peptide-receptor component protein [Source:MGI Symbol;Acc:MGI:1100818]
Coordinates
chr5:130029290-130037918:+
Coord C1 exon
chr5:130029290-130029407
Coord A exon
chr5:130034912-130034948
Coord C2 exon
chr5:130037820-130037918
Length
37 bp
Sequences
Splice sites
3' ss Seq
GGCTCTCTGTTCTTTTGTAGGAA
3' ss Score
10.62
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GGCGGTCCCAGCGTGCCTTGCGGCACACACACGGAACCGGTGAGCAGAGCAGCGCCGGCGCAACGTGAGACTCTTCTCACGGCGGTTGCGTACGCTGAGGCAGAGGCAACATGGAAGT
Seq A exon
GAAGGATGCGAACGCAGCACTGCTCAGCAACTATGAG
Seq C2 exon
GTGTTCCAGTTACTAACGGATCTCAAAGAGCAGCGGAAGGAGAGTGGGAAGAACAAGCATAGCGCTGGGCAGCAGAACTTGAACGCCATCACCTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025532-'0-2,'0-0,5-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=0.038 C2=0.614
Domain overlap (PFAM):
C1:
NO
A:
PF0387411=RNA_pol_Rpb4=PU(11.9=38.5)
C2:
PF0387411=RNA_pol_Rpb4=FE(27.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCAGAGGCAACATGGAAG
R:
TGATGGCGTTCAAGTTCTGCT
Band lengths:
113-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types