MmuALTD0003589-1/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000025532 | Crcp
Description
calcitonin gene-related peptide-receptor component protein [Source:MGI Symbol;Acc:MGI:1100818]
Coordinates
chr5:130029307-130034948:+
Coord C1 exon
chr5:130029307-130029407
Coord A exon
NA
Coord C2 exon
chr5:130034912-130034948
Length
0 bp
Sequences
Splice sites
5' ss Seq
AGTGTAAGC
5' ss Score
5.32
3' ss Seq
GGCTCTCTGTTCTTTTGTAGGAA
3' ss Score
10.62
Exon sequences
Seq C1 exon
TTGCGGCACACACACGGAACCGGTGAGCAGAGCAGCGCCGGCGCAACGTGAGACTCTTCTCACGGCGGTTGCGTACGCTGAGGCAGAGGCAACATGGAAGT
Seq A exon
NA
Seq C2 exon
GAAGGATGCGAACGCAGCACTGCTCAGCAACTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025532-0-0,1-0,2-0-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.038
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0387411=RNA_pol_Rpb4=PU(11.9=38.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCACACACACGGAACC
R:
CTCATAGTTGCTGAGCAGTGCT
Band lengths:
135-222
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types