MmuALTD0003589-2/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000025532 | Crcp
Description
calcitonin gene-related peptide-receptor component protein [Source:MGI Symbol;Acc:MGI:1100818]
Coordinates
chr5:130029307-130034948:+
Coord C1 exon
chr5:130029307-130029407
Coord A exon
chr5:130029408-130029494
Coord C2 exon
chr5:130034912-130034948
Length
87 bp
Sequences
Splice sites
5' ss Seq
CGGGTGGGC
5' ss Score
5.01
3' ss Seq
GGCTCTCTGTTCTTTTGTAGGAA
3' ss Score
10.62
Exon sequences
Seq C1 exon
TTGCGGCACACACACGGAACCGGTGAGCAGAGCAGCGCCGGCGCAACGTGAGACTCTTCTCACGGCGGTTGCGTACGCTGAGGCAGAGGCAACATGGAAGT
Seq A exon
GTAAGCGACACGACCAGGGGAAGCCAGGATCATCTGGGGACCGCGAAGCGGCCGGCGGCTAGACCTCGGGACCCGCGAGCAGGACGG
Seq C2 exon
GAAGGATGCGAACGCAGCACTGCTCAGCAACTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025532-0-0,1-0,2-0-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.038
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0387411=RNA_pol_Rpb4=PU(11.9=38.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCACACACACGGAACC
R:
CTCATAGTTGCTGAGCAGTGCT
Band lengths:
135-222
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types