HsaEX0017157 @ hg19
Exon Skipping
Gene
ENSG00000241258 | CRCP
Description
CGRP receptor component [Source:HGNC Symbol;Acc:17888]
Coordinates
chr7:65579591-65595235:+
Coord C1 exon
chr7:65579591-65579957
Coord A exon
chr7:65592691-65592727
Coord C2 exon
chr7:65595114-65595235
Length
37 bp
Sequences
Splice sites
3' ss Seq
AGCTTACTTTTCTTTTTCAGGAA
3' ss Score
11.04
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
GGTTGCAGTAAGCCGAGATCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAGGTTAAAGAAAAAAAGAAAAGAAAACACAAGATAATCCTGTCCGCAAACGCTTAGCAGTCTTAAATCGGCCTGGTGGAAGGATGCAGGGACACTCCCCCACCCTGCCCCCCGAAAAAGGGGAACGCGCAGCGCGAGGTTCCGGGTCCGCCAAGCTCCCGGCATGCAGCGCGGCGATCCCGGCGAGCACCTTGGCGCGCGGAGCTGGCACCTTGGCGCTGTTGGTGGCGGCGGAGACAGCTGTGAAGTGTGAGGTTCTTTGTCTGCTGGCAGCTAGGGGCGACGAGGCGGGACGTCATGGAAGT
Seq A exon
GAAGGATGCCAATTCTGCGCTTCTCAGTAACTACGAG
Seq C2 exon
ATGGAGTCTCGCTCTGTCACCCAGGCTGGAGTACAGTGGCACCATCCAGGCTCACTGCAACCTCTGCCTCCCGGATTCAAGTGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000241258-'2-9,'2-8,5-9
Average complexity
C1
Mappability confidence:
89%=80=50%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.433 A=0.187 C2=0.852
Domain overlap (PFAM):
C1:
NO
A:
PF0387411=RNA_pol_Rpb4=PU(11.5=76.9)
C2:
PF139001=GVQW=WD(100=78.6)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGACAGCTGTGAAGTGTG
R:
CTGGATGGTGCCACTGTACTC
Band lengths:
123-160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)