GgaEX0027725 @ galGal4
Exon Skipping
Gene
ENSGALG00000002587 | CRCP
Description
CGRP receptor component [Source:HGNC Symbol;Acc:HGNC:17888]
Coordinates
chr19:4957807-4962202:+
Coord C1 exon
chr19:4957807-4958085
Coord A exon
chr19:4959914-4959950
Coord C2 exon
chr19:4962104-4962202
Length
37 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTCCTTTCTTTTAGAAA
3' ss Score
11.63
5' ss Seq
GAGGTACGT
5' ss Score
10.2
Exon sequences
Seq C1 exon
TGCCACGCGGGAGGCCCGGGTTCGATTCCCGGCCAATGCAGTTGCTATATTTTGCATGTGAGAGCATGTTTGGATTATTTTATTTTACTTTATTTTATCTTCTTTTATTTATTTATTTCCTCTTCGCTTTCCGCTTCCTCCCCGCTCACCCGAACCTCCTTCAGCCTCGCCGCGGCTCCTCGCGCGCACTCCCGCCCGGCTGTGGTGCGGTAGGGGCCGCCCCCGGTGAGGCGTTGACCTCAGCGCGCGGCTGCGCGGGGCGGCGGACAAGATGGAGGT
Seq A exon
AAAGGATGCAAATGCTGCACTGTTGAGTAACTTTGAG
Seq C2 exon
GTGTTCCAGCTACTCACTGATCTTAAGCAGCAGCGCAAAGAGAGTGGAAAAAGCAAGCAGAGCTCTGGTCAGCAGAATCTGAACACAATCATGTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002587_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.303
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0387411=RNA_pol_Rpb4=FE(28.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGGCGTTGACCTCAGC
R:
GACCAGAGCTCTGCTTGCTTT
Band lengths:
124-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]