HsaEX0017157 @ hg38
Exon Skipping
Gene
ENSG00000241258 | CRCP
Description
CGRP receptor component [Source:HGNC Symbol;Acc:HGNC:17888]
Coordinates
chr7:66124558-66130842:+
Coord C1 exon
chr7:66124558-66124658
Coord A exon
chr7:66127704-66127740
Coord C2 exon
chr7:66130744-66130842
Length
37 bp
Sequences
Splice sites
3' ss Seq
AGCTTACTTTTCTTTTTCAGGAA
3' ss Score
11.04
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
TCCTTTCTTGTTTTTGATTAGAGACACTTGAGCCCAGGCTGGATTCAAACTCCGGGACGAAGTGATCCTCCTGTCTCAGCCCGGAGTAGCTGGGATGACAG
Seq A exon
GAAGGATGCCAATTCTGCGCTTCTCAGTAACTACGAG
Seq C2 exon
GTATTTCAGTTACTAACTGATCTGAAAGAGCAGCGTAAAGAAAGTGGAAAGAATAAACACAGCTCTGGGCAACAGAACTTGAACACTATCACCTATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000241258-'10-7,'10-1,11-7
Average complexity
C1
Mappability confidence:
92%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.205 C2=0.424
Domain overlap (PFAM):
C1:
NA
A:
PF0387411=RNA_pol_Rpb4=PU(11.5=76.9)
C2:
PF0387411=RNA_pol_Rpb4=FE(27.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGATCCTCCTGTCTCAGCC
R:
CTGTTGCCCAGAGCTGTGTTT
Band lengths:
116-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development