BtaEX0010056 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000037489 | CRCP
Description
Bos taurus CGRP receptor component (CRCP), mRNA. [Source:RefSeq mRNA;Acc:NM_001077870]
Coordinates
chr25:28262365-28275632:+
Coord C1 exon
chr25:28262365-28262588
Coord A exon
chr25:28271655-28271691
Coord C2 exon
chr25:28275534-28275632
Length
37 bp
Sequences
Splice sites
3' ss Seq
CAGTTCGCTTTGTTTTGCAGGAA
3' ss Score
8.92
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
GCGAAGAGCATAGGCGTTCAAATGGCCAGAGGGGCCCGTCCCGCTCGCGGCCCCGCGGGCGTCCTCCAGGCTCCCGGCGTGCATCGCGGCGATCCCGGCGTGCATCGCGGCGCGCGGAGCCGGCTCTGGGGCGTGCGGCGCGGAGCCGGGAGCCGCAGCTTCTCGGCCTGGAGCTCGGCGTGTGCTGGTGACCCGAGGAGAAGAGGCGGAGAAGACATGGAAGT
Seq A exon
GAAGGATGCCAATGCTGCACTGCTCAGTAACTATGAG
Seq C2 exon
GTGTTCCAGTTACTAACTGACTTGAAAGAGCAGCGTAAAGAAAGTGGAAAGAATAAACACAGTTCTGGGCAACAGAACTTGAATACTATCACATATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037489_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.485
Domain overlap (PFAM):
C1:
NO
A:
PF0387411=RNA_pol_Rpb4=PU(4.3=38.5)
C2:
PF0387411=RNA_pol_Rpb4=FE(27.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTGACCCGAGGAGAAGAG
R:
CTGTTGCCCAGAACTGTGTTT
Band lengths:
115-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development