GgaEX0027725 @ galGal3
Exon Skipping
Gene
ENSGALG00000002587 | CRCP
Description
NA
Coordinates
chr19:4924439-4928963:+
Coord C1 exon
chr19:4924439-4924846
Coord A exon
chr19:4926675-4926711
Coord C2 exon
chr19:4928865-4928963
Length
37 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTCCTTTCTTTTAGAAA
3' ss Score
11.63
5' ss Seq
GAGGTACGT
5' ss Score
10.2
Exon sequences
Seq C1 exon
TACCAAGGTGGGCATGAGAAAAGGTGTGGGCAGCAGTCAGCATAGACCGGCTGCTGTGCCATTCAACCGAGCAGACGGGGAAAACATTTTCAGCAGACGCATTGGTGGTTCAGTGGTAGAATTCTCGCCTGCCACGCGGGAGGCCCGGGTTCGATTCCCGGCCAATGCAGTTGCTATATTTTGCATGTGAGAGCATGTTTGGATTATTTTATTTTACTTTATTTTATCTTCTTTTATTTATTTATTTCCTCTTCGCTTTCCGCTTCCTCCCCGCTCACCCGAACCTCCTTCAGCCTCGCCGCGGCTCCTCGCGCGCACTCCCGCCCGGCTGTGGTGCGGTAGGGGCCGCCCCCGGTGAGGCGTTGACCTCAGCGCGCGGCTGCGCGGGGCGGCGGACAAGATGGAGGT
Seq A exon
AAAGGATGCAAATGCTGCACTGTTGAGTAACTTTGAG
Seq C2 exon
GTGTTCCAGCTACTCACTGATCTTAAGCAGCAGCGCAAAGAGAGTGGAAAAAGCAAGCAGAGCTCTGGTCAGCAGAATCTGAACACAATCATGTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002587_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.364
Domain overlap (PFAM):
C1:
NA
A:
PF0387411=RNA_pol_Rpb4=PU(4.3=41.7)
C2:
PF102924=7TM_GPCR_Srab=FE(22.7=100),PF0387411=RNA_pol_Rpb4=FE(28.1=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGGCGTTGACCTCAGC
R:
GACCAGAGCTCTGCTTGCTTT
Band lengths:
124-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]