HsaEX0017159 @ hg38
Exon Skipping
Gene
ENSG00000241258 | CRCP
Description
CGRP receptor component [Source:HGNC Symbol;Acc:HGNC:17888]
Coordinates
chr7:66127704-66134374:+
Coord C1 exon
chr7:66127704-66127740
Coord A exon
chr7:66130744-66130842
Coord C2 exon
chr7:66134280-66134374
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTTTTTGTATCTCCTCCTAGGTA
3' ss Score
11.36
5' ss Seq
GAAGTAAGG
5' ss Score
6.38
Exon sequences
Seq C1 exon
GAAGGATGCCAATTCTGCGCTTCTCAGTAACTACGAG
Seq A exon
GTATTTCAGTTACTAACTGATCTGAAAGAGCAGCGTAAAGAAAGTGGAAAGAATAAACACAGCTCTGGGCAACAGAACTTGAACACTATCACCTATGAA
Seq C2 exon
ACGTTAAAATACATATCAAAAACACCATGCAGGCACCAGAGTCCTGAAATTGTCAGAGAATTTCTCACAGCATTGAAAAGCCACAAGTTGACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000241258_MULTIEX1-2/6=C1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.205 A=0.424 C2=0.023
Domain overlap (PFAM):
C1:
PF0387411=RNA_pol_Rpb4=PU(11.5=76.9)
A:
PF0387411=RNA_pol_Rpb4=FE(27.8=100)
C2:
PF0387411=RNA_pol_Rpb4=FE(35.6=100)
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGATGCCAATTCTGCGCTT
R:
TGGTCAACTTGTGGCTTTTCA
Band lengths:
130-229
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development