DreEX0024171 @ danRer10
Exon Skipping
Gene
ENSDARG00000069373 | crcp
Description
calcitonin gene-related peptide-receptor component protein [Source:ZFIN;Acc:ZDB-GENE-060825-150]
Coordinates
chr21:31211899-31214795:-
Coord C1 exon
chr21:31214759-31214795
Coord A exon
chr21:31214570-31214668
Coord C2 exon
chr21:31211899-31211993
Length
99 bp
Sequences
Splice sites
3' ss Seq
AGTGTTCTCTACTCCACCAGGTC
3' ss Score
7.64
5' ss Seq
GAGGTGCTT
5' ss Score
3.62
Exon sequences
Seq C1 exon
GAGGGATGCCAATGCTGCTATGCTGAGCAATTATGAG
Seq A exon
GTCTATCAGCTGCTGACAGACCTGAAAGAAAAAAGAAAGGAGATGGTTAAAAATAAGCACAGCACCGGGCAGCAGAATCTCAACACCATCATGTATGAG
Seq C2 exon
ACCCTGAAGTACCTCTCTAAGACGCCATGTGTTCATCAGAAACCAGAGACAGTGAAGGAGTTCCTCACCGCCATGCTGCCTCACAAACTTACTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069373_MULTIEX1-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.455 C2=0.250
Domain overlap (PFAM):
C1:
PF061336=DUF964=FE(16.2=100),PF0387411=RNA_pol_Rpb4=PU(4.3=38.5)
A:
PF061336=DUF964=FE(43.2=100),PF0387411=RNA_pol_Rpb4=FE(27.8=100)
C2:
PF061336=DUF964=PD(33.8=78.1),PF0387411=RNA_pol_Rpb4=FE(27.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGGATGCCAATGCTGCTAT
R:
AAGTTTGTGAGGCAGCATGGC
Band lengths:
127-226
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]