MmuEX6021322 @ mm10
Exon Skipping
Gene
ENSMUSG00000025532 | Crcp
Description
calcitonin gene-related peptide-receptor component protein [Source:MGI Symbol;Acc:MGI:1100818]
Coordinates
chr5:130034912-130042300:+
Coord C1 exon
chr5:130034912-130034948
Coord A exon
chr5:130037820-130037918
Coord C2 exon
chr5:130042206-130042300
Length
99 bp
Sequences
Splice sites
3' ss Seq
TCTCTTGTGCCCCTTCCTAGGTG
3' ss Score
10.71
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
GAAGGATGCGAACGCAGCACTGCTCAGCAACTATGAG
Seq A exon
GTGTTCCAGTTACTAACGGATCTCAAAGAGCAGCGGAAGGAGAGTGGGAAGAACAAGCATAGCGCTGGGCAGCAGAACTTGAACGCCATCACCTATGAG
Seq C2 exon
ACACTAAAGTACATATCAAAAACACCATGTAGGAACCAGAGTCCAGCGATTGTCCAAGAATTCCTCACAGCAATGAAAAGCCACAAGCTGACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025532-'1-9,'1-2,6-9=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=0.614 C2=0.016
Domain overlap (PFAM):
C1:
PF0387411=RNA_pol_Rpb4=PU(11.9=38.5)
A:
PF0387411=RNA_pol_Rpb4=FE(27.8=100)
C2:
PF0387411=RNA_pol_Rpb4=FE(27.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCACTGCTCAGCAACTATGA
R:
GCTTGTGGCTTTTCATTGCTGT
Band lengths:
111-210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types