RnoEX0024425 @ rn6
Exon Skipping
Gene
ENSRNOG00000000901 | Crcp
Description
CGRP receptor component [Source:RGD Symbol;Acc:620753]
Coordinates
chr12:30144009-30151060:-
Coord C1 exon
chr12:30151024-30151060
Coord A exon
chr12:30148187-30148285
Coord C2 exon
chr12:30144009-30144103
Length
99 bp
Sequences
Splice sites
3' ss Seq
TCTCCCATGGCCCTTCCTAGGTG
3' ss Score
7.39
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
GAAGGATGCGAACGCTGCCCTGCTCAGTAACTACGAG
Seq A exon
GTGTTCCAGTTACTGACAGACCTCAAAGAGCAGCGGAAGGAGAGCGGGAAGAACAAGCATAGCGCCGGGCAGCAGAACTTGAACGCCATCACCTACGAG
Seq C2 exon
ACATTAAAATACATATCGAAAACTCCATGTAAGAACCAGAGTCCGGCGATTGTCCAAGAATTCCTCACAGCAATGAAGAGCCACAAGCTGACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000901-'10-6,'10-3,11-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.409 C2=0.021
Domain overlap (PFAM):
C1:
PF061336=DUF964=FE(17.1=100),PF117613=CbiG_mid=FE(17.9=100),PF0387411=RNA_pol_Rpb4=PU(11.6=38.5)
A:
PF061336=DUF964=FE(45.7=100),PF117613=CbiG_mid=FE(47.8=100),PF0387411=RNA_pol_Rpb4=FE(74.4=100)
C2:
PF061336=DUF964=FE(30.1=100),PF0387411=RNA_pol_Rpb4=FE(27.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGATGCGAACGCTGCC
R:
TGGCTCTTCATTGCTGTGAGG
Band lengths:
120-219
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]