BtaEX0010055 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000037489 | CRCP
Description
Bos taurus CGRP receptor component (CRCP), mRNA. [Source:RefSeq mRNA;Acc:NM_001077870]
Coordinates
chr25:28271655-28277030:+
Coord C1 exon
chr25:28271655-28271691
Coord A exon
chr25:28275534-28275632
Coord C2 exon
chr25:28276936-28277030
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTTTGTATATCTCTTCCTAGGTG
3' ss Score
10.55
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GAAGGATGCCAATGCTGCACTGCTCAGTAACTATGAG
Seq A exon
GTGTTCCAGTTACTAACTGACTTGAAAGAGCAGCGTAAAGAAAGTGGAAAGAATAAACACAGTTCTGGGCAACAGAACTTGAATACTATCACATATGAA
Seq C2 exon
ACATTAAAATACATATCAAAAACACCATGTAAGCACCAGAGTCCTGAGATTGTGAGAGAATTTCTGACAGCAATGAAAAGCCACAAGTTGACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037489-'6-5,'6-4,7-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.485 C2=0.156
Domain overlap (PFAM):
C1:
PF0387411=RNA_pol_Rpb4=PU(4.3=38.5)
A:
PF0387411=RNA_pol_Rpb4=FE(27.8=100)
C2:
PF0387411=RNA_pol_Rpb4=FE(27.0=100),PF149421=Muted=PU(4.5=9.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGATGCCAATGCTGCACT
R:
TGGTCAACTTGTGGCTTTTCA
Band lengths:
131-230
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development