GgaEX1017534 @ galGal4
Exon Skipping
Gene
ENSGALG00000002587 | CRCP
Description
CGRP receptor component [Source:HGNC Symbol;Acc:HGNC:17888]
Coordinates
chr19:4959914-4965960:+
Coord C1 exon
chr19:4959914-4959950
Coord A exon
chr19:4962104-4962202
Coord C2 exon
chr19:4965866-4965960
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTCTGTTTGCTTTTTTCCAGGTG
3' ss Score
11.58
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
AAAGGATGCAAATGCTGCACTGTTGAGTAACTTTGAG
Seq A exon
GTGTTCCAGCTACTCACTGATCTTAAGCAGCAGCGCAAAGAGAGTGGAAAAAGCAAGCAGAGCTCTGGTCAGCAGAATCTGAACACAATCATGTATGAG
Seq C2 exon
ACACTGAAATACATCTCAAAAACACCGTGCAGATACCAGAGTCCTGAGACTGTCAGAGAGTTCCTCATTGCAATGAAGGGCCATAAGCTGACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002587_MULTIEX1-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.303 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0387411=RNA_pol_Rpb4=FE(28.1=100)
C2:
PF0387411=RNA_pol_Rpb4=FE(27.2=100),PF149421=Muted=PU(4.7=9.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAAATGCTGCACTGTTGAGTAACT
R:
CAGCTTATGGCCCTTCATTGC
Band lengths:
119-218
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]