HsaEX0017159 @ hg19
Exon Skipping
Gene
ENSG00000241258 | CRCP
Description
CGRP receptor component [Source:HGNC Symbol;Acc:17888]
Coordinates
chr7:65592691-65599361:+
Coord C1 exon
chr7:65592691-65592727
Coord A exon
chr7:65595731-65595829
Coord C2 exon
chr7:65599267-65599361
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTTTTTGTATCTCCTCCTAGGTA
3' ss Score
11.36
5' ss Seq
GAAGTAAGG
5' ss Score
6.38
Exon sequences
Seq C1 exon
GAAGGATGCCAATTCTGCGCTTCTCAGTAACTACGAG
Seq A exon
GTATTTCAGTTACTAACTGATCTGAAAGAGCAGCGTAAAGAAAGTGGAAAGAATAAACACAGCTCTGGGCAACAGAACTTGAACACTATCACCTATGAA
Seq C2 exon
ACGTTAAAATACATATCAAAAACACCATGCAGGCACCAGAGTCCTGAAATTGTCAGAGAATTTCTCACAGCATTGAAAAGCCACAAGTTGACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000241258_MULTIEX2-2/3=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.187 A=0.485 C2=0.031
Domain overlap (PFAM):
C1:
PF0387411=RNA_pol_Rpb4=PU(11.5=76.9)
A:
PF0387411=RNA_pol_Rpb4=FE(27.8=100)
C2:
PF0387411=RNA_pol_Rpb4=FE(35.2=100),PF149421=Muted=PU(6.2=12.5)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGATGCCAATTCTGCGCTT
R:
TGGTCAACTTGTGGCTTTTCA
Band lengths:
130-229
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)