HsaEX0017158 @ hg19
Exon Skipping
Gene
ENSG00000241258 | CRCP
Description
CGRP receptor component [Source:HGNC Symbol;Acc:17888]
Coordinates
chr7:65592691-65595829:+
Coord C1 exon
chr7:65592691-65592727
Coord A exon
chr7:65595114-65595235
Coord C2 exon
chr7:65595731-65595829
Length
122 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTTTTTCAGATG
3' ss Score
13.03
5' ss Seq
CAGGTGCCG
5' ss Score
6.46
Exon sequences
Seq C1 exon
GAAGGATGCCAATTCTGCGCTTCTCAGTAACTACGAG
Seq A exon
ATGGAGTCTCGCTCTGTCACCCAGGCTGGAGTACAGTGGCACCATCCAGGCTCACTGCAACCTCTGCCTCCCGGATTCAAGTGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAG
Seq C2 exon
GTATTTCAGTTACTAACTGATCTGAAAGAGCAGCGTAAAGAAAGTGGAAAGAATAAACACAGCTCTGGGCAACAGAACTTGAACACTATCACCTATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000241258_MULTIEX2-1/3=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.187 A=0.852 C2=0.485
Domain overlap (PFAM):
C1:
PF0387411=RNA_pol_Rpb4=PU(11.5=76.9)
A:
PF139001=GVQW=WD(100=78.6)
C2:
PF0387411=RNA_pol_Rpb4=FE(27.8=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGATGCCAATTCTGCGCT
R:
GGTGATAGTGTTCAAGTTCTGTTGC
Band lengths:
130-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)