GgaEX1017534 @ galGal3
Exon Skipping
Gene
ENSGALG00000002587 | CRCP
Description
NA
Coordinates
chr19:4927707-4932721:+
Coord C1 exon
chr19:4927707-4927839
Coord A exon
chr19:4928865-4928963
Coord C2 exon
chr19:4932627-4932721
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTCTGTTTGCTTTTTTCCAGGTG
3' ss Score
11.58
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
CTTGCAGTGCCTGCAGCTATATTGGTCACGGCTTTTTACTGCTCTTCAAGTTACTGATTCCTTTAAAACTATGGACCTCTTTCTGTTTGCTCCTCTTTTCCTTGATGATGTAGCTAACATTCTCTTTATCAAG
Seq A exon
GTGTTCCAGCTACTCACTGATCTTAAGCAGCAGCGCAAAGAGAGTGGAAAAAGCAAGCAGAGCTCTGGTCAGCAGAATCTGAACACAATCATGTATGAG
Seq C2 exon
ACACTGAAATACATCTCAAAAACACCGTGCAGATACCAGAGTCCTGAGACTGTCAGAGAGTTCCTCATTGCAATGAAGGGCCATAAGCTGACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002587-'1-3,'1-2,3-3=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.364 C2=0.000
Domain overlap (PFAM):
C1:
PF102924=7TM_GPCR_Srab=PU(23.4=75.0),PF0387411=RNA_pol_Rpb4=PU(3.5=9.1)
A:
PF102924=7TM_GPCR_Srab=FE(22.7=100),PF0387411=RNA_pol_Rpb4=FE(28.1=100)
C2:
PF102924=7TM_GPCR_Srab=FE(22.0=100),PF0387411=RNA_pol_Rpb4=FE(27.2=100),PF149421=Muted=PU(4.7=9.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGCTATATTGGTCACGGC
R:
AGGACTCTGGTATCTGCACGG
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]