RnoALTD0008473-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000009403 | Dcaf17
Description
DDB1 and CUL4 associated factor 17 [Source:RGD Symbol;Acc:1565551]
Coordinates
chr3:57656152-57659204:+
Coord C1 exon
chr3:57656152-57656226
Coord A exon
NA
Coord C2 exon
chr3:57659115-57659204
Length
0 bp
Sequences
Splice sites
5' ss Seq
TCGGCAGGT
5' ss Score
1.34
3' ss Seq
ATTTTCTTGTTATCTTGTAGGCA
3' ss Score
10.45
Exon sequences
Seq C1 exon
GTACCTGAGCTGGGACACTCCTCAAGAGGTCATTGCAGTGAAGTCGGCTCAGAACAAAGGGTCTGCAGCAGCTCG
Seq A exon
NA
Seq C2 exon
GCAGGCACTCAGCCTCCTGTTCTGTTGTACCTCGCCGTGTTCCGGGTCCTGCCCTTTTCCCTTGTAGGGATTCTAGAGATCAACAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009403-6-4,7-4-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTGGGACACTCCTCAAGA
R:
GGCGAGGTACAACAGAACAGG
Band lengths:
105-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]